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openfree difference among individuals & populations in one species.


Point Variation


The is an openfree web resource and encyclopedia of world wide SNP (Single Nucleotide Polymorphism), SV, Indels, CNV, and other variants. aims to support the international genome variance researches by collecting, organizing, analyzing, and disseminating variome information.  

What are Variome and Variomics?

Are humans a single species?: Yes, but with many diverse sub puplations from ancient and modern propagations.


Ethnic variomes:

   KoVariome  |  Chinese variome  |  Japanese variome



openfree variome information guildeline

 Current Research (Please list your projects here)

  • Applications

 Service Opened!

Under development!

  • ALU2NMD        :  A database of human ALUs resulting NMD.
  • Disease2Gene2SNP project with istech members
  • SNP@Structural Domain : A web resource of Single Nucleotide Polymorphisms (SNPs) within structural protien domains
  • Alternative Splicing Resource : A web resource for the alternative splicing events


  • Research
    SAPs (Single Amino acid Polymorphisms) with High Levels of Population Differentiation are Enriched in Transmembrane Protein Domains
  •  anlaysis SNPs within structural domains
  •  variation of gene expression and seuqences
  •  analysis SNPs within human - chimpanzee ortholog genes



      SNPpipe: a collection of automatic downloading and parsing modules  Website

Web Resources 


  • [PUBLISHED] in Human Mutation
    ssSNPTarget : Genome-Wide Splice-Site Single Nucleotide Polymorphism Database
  • [PUBLISHED] in BMC Bioinformatics
    MitoVariome : A variome database of human mitochondrial DNA 


Research results


Broadly External Links

a PASNP site: Pan Asia SNP project related site.
siphs:a life sciences community,
Medicine and molecular biology DB
dbGap: a Database of Genome Wide Association Studies
FESTA tagSNP picker
Haplo, Haplot
Allele Frequency Database at Yale. USA

Q & A


Meetings and conferences
International Meetings on Variome

SNP Basics

Variome Server at PGI, GRF.


Members (everyone is welcome to participate in)

Variomics and SNP References

    1. Prichard et al, 2000, Inference of Population Structure Using Multilocus Genotype Data, Genetics, 155, 945-959.
    2. Bowcock et al, 1994, High resolution of human evolutionary trees with polymorphic microsatellites, Nature, 368, 31, 455-457.
    3. Shriver et al, 2004, The genome distribution of population substructure in four populations using 8,524 autosomal SNPs.
    4. Shriver et al, 2005, Large-scale SNP analysis reveals clustered and continuous patterns o f human genetic variation.
    5. Adeyemo et al, 2005, Genetic structure in four West African population groups.
    6. Chakraborty and Jin, 1993, A unified approach to study hypervariable polymorphisms: Statistical considerations of determining relatedness and population distances.


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